QIIME 2 Developer Documentation

• Quickstart
• Architecture Overview
• The Plugin Object and Entrypoints
• Actions
  • Methods
  • Visualizers
  • Pipelines
  • Transformers
  • Collections
• Parallelizing QIIME 2 Pipelines
• Pipeline Resumption in QIIME 2
• How Data is Stored
  • Anatomy of an Archive
  • Archive Versions
  • Semantic and Primitive Types
  • File Formats and Directory Formats
  • Decentralized Provenance Tracking
• Using Metadata
• Coordinating With Other Plugins
• Testing Plugins
• Publishing a Plugin on Library
  • Library Publishing Tutorial
  • Packaging Infrastructure
• Plugin tutorials
  • Developing a plugin for dummies
  • Publishing your plugin on conda
  • Updating your qiime2 plugin
  • Writing Usage Examples for your QIIME 2 plugin
• Internal Details
  • Garbage Collection
  • Metaprogramming
  • Notes on Pickling
  • Transformation API
  • Type System Internals
• API Reference
  • Plugin Definition and Registration
  • Metadata
  • Usage API
    • Usage API (for example authors)
    • Usage API (for interface drivers)
    • Premade Usage Drivers
  • Artifact Cache
    • Cache
    • Pool
  • Interface Development & The Artifact API (SDK)
  • Miscellaneous Utilities
• Glossary
• Getting Help