QIIME 2 Developer Documentation

• Quickstart
• Architecture Overview
• The Plugin Object and Entrypoints
• Actions
  • Methods
  • Visualizers
  • Pipelines
  • Transformers
• How Data is Stored
  • Anatomy of an Archive
  • Semantic and Primitive Types
  • File Formats and Directory Formats
  • Decentralized Provenance Tracking
• Using Metadata
• Coordinating With Other Plugins
• Testing Plugins
  • Global CI (Busywork)
• Publishing a Plugin
• Plugin tutorials
  • Developing a plug-in for dummies
  • Publishing your plugin on conda
  • Updating your qiime2 plugin
• Internal Details
  • Garbage Collection
  • Metaprogramming
  • Notes on Pickling
  • Transformation API
  • Type System Internals
• API Reference
  • Plugin Definition and Registration
  • Metadata
  • Interface Development & The Artifact API (SDK)
  • Miscellaneous Utilities
  • Usage API
• Glossary
• Getting Help